シラバス Syllabus	Doctoral Program in Biomedical Sciences
科目名・科目番号 Subjects・Course Number	02EW421 /   Lecture and Discussion in Genome and Environmental Medicine I	02EW423  / Seminar in Genome and Environmental Medicine　Ⅰ	02EW425  / Practice  in Genome and Environmental Medicine I
	02EW422 / Lecture and Discussion in Genome and Environmental Medicine II	02EW424  / Seminar in Genome and Environmental Medicine II	02EW426　/ Practice  in Genome and Environmental Medicine Ⅱ
研究分野 Laboratories	Genome Biology	Genome Biology	Genome Biology
使用言語 Language used （Japanese,  English,  Bilingual）	Bilingual	Bilingual	Bilingual
他研究室学生の受け入れの可否（〇×） Availability for students from other lab.	○ possible	○ possible	TBD upon request.
他研究室学生の問い合わせ先 Contact Information for Students from Other  Lab.	MURATANI Masafumi: muratani	MURATANI Masafumi: muratani	MURATANI Masafumi: muratani
授業形態 Course Type	Lecture, presentation and discussion	Seminar	Practice
標準履修年次 Year	1 or 2	1 or 2	1 or 2
実施学期・曜時限等 Semester,Day and Period	ⅠSpring semester / ⅡAutumn semester	ⅠSpring semester / ⅡAutumn semester	ⅠSpring semester / ⅡAutumn semester
開講場所 Room Number	Conact the faculty member	Conact the faculty member	Conact the faculty member
単位数 Credit	Spring and Autumn semester, 2 x 2 credits	Spring and Autumn semester, 2 x 2 credits	Spring and Autumn semester, 2 x 2 credits
担当教員名・オフィスアワー等	（make an appointment by E-mail）	（make an appointment by E-mail）	（make an appointment by E-mail）
Faculty Members and E-mail	MURATANI Masafumi: muratani	MURATANI Masafumi: muratani	MURATANI Masafumi: muratani
授業概要 Course overview	Students are required to present their own research progress. Main research areas include: - Genomics analysis in space medical science and biology. - Technology development and application of cell-free DNA and RNA analysis for non-invasive monitoring of environmental responses and disease statuses. - Integrative genome and epigenome analysis of clinical samples.	Students attend seminars and/or read papers to learn examples of genomics analysis (RNAseq, ChIPseq and Exome analysis). Knowledge and skills acquired in this subject should be useful for future collaborative projects and data analysis.	Students are expected to learn usage of published data analysis tools by performing analysis of datasets relevant to their own research.
授業の到達目標（学修成果） Course Objectives (Learning Outcomes) ←SBO(Specific Behavior Objectives	1. Defining scientific and social significance of own research project and effectively present to others. 2. Experience extensive try-and-error in sample processing and data analysis to acquire high standard of experimental or data analysis skill. 3. Evaluating analysis results by understanding various technical limitations, and presenting value of research outcomes.	1. Understanding workflow of typical genomics analysis (RNAseq, ChIPseq and Exome analysis). 2. Understanding data analysis from raw data to visualization. 3. For RNAseq, learning various examples of experiments and acquiring good knowledge of downstream analysis which are useful for future collaborations. 4. For Exome analysis, understanding variant call and annotation processes which are relevant for genome medicine field.	1. Experiencing database search to find datasets and analysis tools relevant for own research. 2. Experiencing usage of analysis tools and trouble shooting to validate function of analysis tools and analysis results. 3. Discussing performance of analysis tools and making plans for future technology development to improve analysis.
キーワード Keyword	Genomics, Bioinformatics, Database, Lab automation	Genomics, Bioinformatics, Database, Lab automation	Genomics, Bioinformatics, Database, Lab automation
授業計画 Course Schedule 第1回（月日、時限）担当教員名　講義内容など	Friday 15:00-16:00. Each student report weekly update.	Friday 16:00-16:30. This session may be replaced with attendance to NGS Supergroup Meeting or NGS office hour.	Intensive short-term
履修条件 Course prerequisite	None	None	None
成績評価方法 Grading Criteria	Depending on achievements of SBOs. Grade B for overall success on all SBOs; A for extra effort on any one of SBOs; A+ for significant results from activities related to SBOs.	Depending on achievements of SBOs. Grade B for overall success on all SBOs; A for extra effort on any one of SBOs; A+ for significant results from activities related to SBOs.	Depending on achievements of SBOs. Grade B for overall success on all SBOs; A for extra effort on any one of SBOs; A+ for significant results from activities related to SBOs.
学修時間の割り当て及び授業外における学修方法 Learning method	Lecture 100%	Training (Seminar) 100%	Experiment, Practice 100%
教材・参考文献 Textbook	not rquired	not rquired	Materials will be distributed.
単位取得要件 Requirement to earn credit	Requirement to earn credit: Attendance 80％ or more. Attendance of 5 hours or more to other lab's classes.	Requirement to earn credit: Attendance 80％ or more. Attendance of 5 hours or more to other lab's classes.	Requirement to earn credit: Attendance 80％ or more.
その他（受講上の注意点等） Notes
他の授業科目との関連 Relation to Other Courses	Seminar in Genome and Environmental Medicine I, II Practice  in Genome and Environmental Medicine I, II	Lecture and Discussion in Genome and Environmental Medicine I, II Practice  in Genome and Environmental Medicine I, II	Lecture and Discussion in Genome and Environmental Medicine I, II Seminar in Genome and Environmental Medicine I, II

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