- Kuno A. cstag and cstag-cli: tools for manipulating and visualizing cs tags. Journal of Open Source Software. 2024 9(93), 6066. https: //doi.org/10.21105/joss.06066
- Iwai T, Ohyama A, Osada A, Nishiyama T, Shimizu M, Miki H, Asashima H, Kondo Y, Tsuboi H, Mizuno S, Takahashi S, Ishigami A, Matsumoto I. Role of inter-alpha-trypsin inhibitor heavy chain 4 and its citrullinated form in experimental arthritis murine models. Clin Exp Immunol. 2024 Jan 8:uxae001. doi: 10.1093/cei/uxae001. Online ahead of print. PMID: 38190323
- Park S, Heo JS, Mizuno S, Kim M, An H, Hong E, Kang MG, Kim J, Yun R, Park H, Noh EH, Lee MJ, Yoon K, Kim P, Son M, Pang K, Lee J, Park J, Ooshima A, Kim TJ, Park JY, Yang KM, Myung SJ, Bae H, Lee KM, Letterio J, Park SH, Takahashi S, Kim SJ. Tm4sf19 deficiency inhibits osteoclast multinucleation and prevents bone loss. Metabolism. 2024 Feb;151:155746. doi: 10.1016/j.metabol.2023.15574
- Ha J, Kim M, Park JS, Lee Y, Lee JY, Shin JC, Seo D, Park SS, You J, Jung SM, Kim HY, Mizuno S, Takahashi S, Kim SJ, Park SH.SERTAD1 initiates NLRP3-mediated inflammasome activation through restricting NLRP3 polyubiquitination. Cell Rep. 2024 Feb 10;43(2):113752. doi:10.1016/j.celrep.2024.113752.
- Hashiguchi A, Asashima M, Takahashi S. The Influence of Human Connections and Collaboration on Research Grant Success at Various Career Stages: Regression Analysis. JMIR Form Res. 2024 Feb 28;8:e49905. doi: 10.2196/49905.
- Kong X, Nguyen NV, Li Y, Sakr JS, Williams K, Sharifi S, Chau J, Bayrakci A, Mizuno S, Takahashi S, Kiyono T, Tawil R, Mortazavi A, Yokomori K. Engineered FSHD mutations results in D4Z4 heterochromatin disruption and feedforward DUX4 network activation. iScience.2024 Feb 29;27(4):109357. doi: 10.1016/j.isci.2024.109357.
- Suzuki A, Uranishi K, Nishimoto M, Mizuno Y, Mizuno S, Takahashi S, Eisenman RN, Okuda A. MAX controls meiotic entry in sexually undifferentiated germ cells. Sci Rep. 2024 Mar 4;14(1):5236. doi: 10.1038/s41598-024-55506-7.
- Sato T, Yoshida K, Toki T, Kanezaki R, Terui K, Saiki R, Ojima M, Ochi Y, Mizuno S, Yoshihara M, Uechi T, Kenmochi N, Tanaka S, Matsubayashi J, Kisai K, Kudo K, Yuzawa K, Takahashi Y, Tanaka T, Yamamoto Y, Kobayashi A, Kamio T, Sasaki S, Shiraishi Y, Chiba K, Tanaka H, Muramatsu H, Hama A, Hasegawa D, Sato A, Koh K, Karakawa S, Kobayashi M, Hara J, Taneyama Y, Imai C, Hasegawa D, Fujita N, Yoshitomi M, Iwamoto S, Yamato G, Saida S, Kiyokawa N, Deguchi T, Ito M, Matsuo H, Adachi S Prof, Hayashi Y, Taga T, Moriya Saito A, Horibe K, Watanabe K, Tomizawa D, Miyano S, Takahashi S, Ogawa S, Ito E.Landscape of driver mutations and their clinical effects on Down syndrome-related myeloid neoplasms. Blood. 2024 Mar 21:blood.2023022247. doi: 10.1182/blood.2023022247. Online ahead of print.
PMID: 38513239.
- Yadav MK, Ishida M, Gogoleva N, Liao CW, Salim FN, Kanai M, Kuno A, Hayashi T, Shahri ZJ, Kulathunga K, Samir O, Lyu W,Olivia O, Mbanefo EC, Takahashi S, Hamada M. MAFB in macrophages regulates cold-induced neuronal density in brown adipose tissue. Cell Rep. 2024 Mar 22;43(4):113978. doi: 10.1016/j.celrep.2024.113978.
- Morimoto K , Suzuki H , Kuno A, Daitoku Y , Tanimoto Y , Kato K , Murata K, Sugiyama F and Mizuno S. Regional random mutagenesis driven by multiple sgRNAs and diverse on-target genome editing events to identify functionally important elements in non-coding regions. Open Biol. 2024 Apr;14(4):240007. doi: 10.1098/rsob.240007. Epub 2024 Apr 3.
- Arai J, Hayakawa Y, Tateno H, Murakami K, Hayashi T, Hata M, Matsushita Y, Kinoshita H, Abe S, Kurokawa K, Oya Y, Tsuboi M, Ihara S, Niikura R, Suzuki N, Iwata Y, Shiokawa T, Shiomi C, Uekura C, Yamamoto K, Fujiwara H, Kawamura S, Nakagawa H, Mizuno S, Kudo T,Takahashi S, Ushiku T, Hirata Y, Fujii C, Nakayama J, Shibata S, Woods S, Worthley DL, Hatakeyama M, Wang TC, Fujishiro M. Impaired glycosylation of gastric mucins drives gastric tumorigenesis and serves as a novel therapeutic target. Gastroenterology. 2024 Apr 5:S0016-5085(24)00363-9. doi: 10.1053/j.gastro.2024.03.037.
- Takahashi J, Suzuki T, Sato M, Nitta S, Yaguchi N, Muta T, Tsuchida K, Suda H, Morita M, Hamada S, Masamune A, Takahashi S, Kamei T, Yamamoto M. Differential squamous cell fates elicited by NRF2 gain of function versus KEAP1 loss of function. Cell Rep. 2024 Apr 10;43(4):114104. doi: 10.1016/j.celrep.2024.114104.
- Iizuka-Koga M, Ito M, Yumoto N, Mise-Omata S, Hayakawa T, Komai K, Chikuma S, Takahashi S, Matsumoto I, Sumida T, Yoshimura A.Reconstruction of Sjögren's syndrome-like sialadenitis by a defined disease specific gut-reactive single TCR and an autoantibody. Clin Immunol. 2024 May 16;264:110258. doi: 10.1016/j.clim.2024.110258.
- Wakasugi D, Kondo S, Ferdousi F, Mizuno S, Yada A, Tominaga K, Takahashi S, Isoda H. A rare olive compound oleacein functions as a TrkB agonist and mitigates neuroinflammation both in vitro and in vivo. Cell Commun Signal. 2024 Jun 4;22(1):309. doi: 10.1186/s12964-024-01691-x.
- Husna N, Aiba T, Fujita SI, Saito Y, Shiba D, Kudo T, Takahashi S, Furukawa S, Muratani M. Release of CD36-associated cell-free mitochondrial DNA and RNA as a hallmark of space environment response. Nat Commun. 2024 Jun 11;15(1):4814. doi: 10.1038/s41467-023-41995-z.
- Fujisaki K, Okazaki S, Ogawa S, Takeda M, Sugihara E, Imai K, Mizuno S, Takahashi S, Goitsuka R. B Cells of Early-life Origin Defined by RAG2-based Lymphoid Cell Tracking under Native Hematopoietic Conditions. J Immunol. 2024 Jun 14:ji2400072. doi: 10.4049/jimmunol.2400072.
- Lee DJ, Kim P, Kim HY, Park J, Lee SJ, An H, Heo JS, Lee MJ, Ohshima H, Mizuno S, Takahashi S, Jung HS, Kim SJ. MAST4 regulates stem cell maintenance with DLX3 for epithelial development and amelogenesis. Exp Mol Med. 2024 Jul 1. doi: 10.1038/s12276-024-01264-5.
- Hayashi T, Sadaki S, Tsuji R, Okada R, Fuseya S, Kanai M, Nakamura A, Okamura Y, Muratani M,Wenchao G, Sugasawa T, Mizuno S, Warabi E, Kudo T, Takahashi S, Fujita R. Dual-specificity phosphatases 13 and 27 as key switches in muscle stem cell transition from proliferation to differentiation. Stem Cells. 2024 Jul 8:sxae045. doi: 10.1093/stmcls/sxae045.
- Katoh M, Nomura S, Yamada S, Ito M, Hayashi H, Katagiri M, Heryed T, Fujiwara T, Takeda N, Nishida M, Sugaya M, Kato M, Osawa T, Abe H, Sakurai Y, Ko T, Fujita K, Zhang B, Hatsuse S, Yamada T, Inoue S, Dai Z, Kubota M, Sawami K, Ono M, Morita H, Kubota Y, Mizuno S, Takahashi S, Nakanishi M, Ushiku T, Nakagami H, Aburatani H, Komuro I. Vaccine Therapy for Heart Failure Targeting the Inflammatory Cytokine Igfbp7. Circulation. 2024 Jul 11. doi: 10.1161/CIRCULATIONAHA.123.064719.
- Yoshimi K, Kuno A, Yamauchi Y,Takahashi R, Takahashi S, Mashimo T. Genome editing using type I-E CRISPR-Cas3 in mice and rat zygotes. Cell Rep Methods, 2024 August 08, doi: 10.1016/j.crmeth.2024.100833.
- Hsiao YT, Yoshida Y, Okuda S, Abe M, Mizuno S, Takahashi S, Nakagami H, Morishita R, Kamimura K, Terai S, Aung TM, Li J, Furihata T, Tang JY, Walsh K, Ishigami A, Minamino T, Shimizu I. PCPE-1, a brown adipose tissue-derived cytokine, promotes obesity-induced liver fibrosis. EMBO J. 2024 Aug 19. doi: 10.1038/s44318-024-00196-0.
- Kanai M, Nishino T, Daassi D, Kimura A, Liao CW, Javanfekr Shahri Z, Wakimoto A, Gogoleva N, Usui T, Morito N, Arita M, Takahashi S, Hamada M. MAFB in Macrophages Regulates Prostaglandin E2-Mediated Lipid Mediator Class Switch through ALOX15 in Ischemic Acute Kidney Injury. J Immunol. 2024 Sep 4:ji2300844. doi: 10.4049/jimmunol.2300844. Online ahead of print. PMID: 39230290.
- Yamada M, Warabi E, Oishi H, Lira VA, Okutsu M. Muscle-derived IL-1β regulates EcSOD expression via the NBR1-p62-Nrf2 pathway in muscle during cancer cachexia. J Physiol. 2024 Sep;602(17):4215-4235. doi: 10.1113/JP286460.
- Yoshihara M, Watabe Y, Momo Morikawa, Iwata S, Hamada M, Sasaki T, Homma N, Takei Y. A case report of an Adachi-Williams type CG plus H aortic arch anomaly and implications for the development of the cervicothoracic circulation. Folia Morphologica (Warsz). 2024 Oct 10. doi: 10.5603/fm.102366. Online ahead of print.
- Caddy HT, Fujino M, Vahabli E, Voigt V, Kelsey LJ, Dilley RJ, Carvalho LS, Takahashi S, Green DJ, Doyle BJ. Simulation of murine retinal hemodynamics in response to tail suspension. Comput Biol Med. 2024 Nov;182:109148. doi: 10.1016/j.compbiomed.2024.109148. Epub 2024 Sep 18.
- Hirata Y, Brems H, Van der Auweraer S, Ohyagi M, Iizuka M, Mise-Omata S, Ito M, Messiaen L, Mizuno S, Takahashi S, Legius E, Yoshimura A. Legius Syndrome mutations in the Ras-regulator SPRED1 abolish its membrane localization and potentially cause neurodegeneration. J Biol Chem. 2024 Nov 5:107969. doi: 10.1016/j.jbc.2024.107969.
- Kim SE, Noda R, Liu YC, Nakajima Y, Kameoka S, Motooka D, Mizuno S, Takahashi S, Takaya K, Murase T, Ikematsu K, Tratsiakova K, Motoyama T, Nakashima M, Kishi K, Martin P, Seno S, Okuzaki D, Mori R. Novel integrated multiomics analysis reveals a key role for integrin beta-like 1 in wound scarring. EMBO Rep. 2024 Nov 18. doi: 10.1038/s44319-024-00322-3.
- Okamura Y, Gochi K, Ishikawa T, Hayashi T, Fuseya S, Suzuki R, Kanai M, Inoue Y, Murakami Y, Sadaki S, Jeon H, Hayama M, Ishii H, Tsunakawa Y, Ochi H, Sato S, Hamada M, Abe C, Morita H, Okada R, Shiba D, Muratani M, Shinohara M, Akiyama T, Kudo T, Takahashi S. Impact of microgravity and lunar gravity on murine skeletal and immune systems during space travel.Sci. Rep. (2024) 14:28774, doi.org/10.1038/s41598-024-79315-0.
- Taki T, Morimoto K, Mizuno S, and Kuno A. KOnezumi-AID: Automation Software for Efficient Multiplex Gene Knockout Using Target-AID, Int. J. Mol. Sci. 2024, 25(24), 13500; https://doi.org/10.3390/ijms252413500.
- Kremsky I, Pergerson R, Justinen S, Stanbouly S, Willey J, Fuller CA, Takahashi S, Vitaterna MH, Bouxsein M, Mao X. Artificial Gravity Attenuates the Transcriptomic Response to Spaceflight in the Optic Nerve and Retina. Int J Mol Sci. 2024 Nov 9;25(22):12041. doi: 10.3390/ijms252212041.
- Nakata S, Fujiyama T, Asano F, Komiya H, Hotta-Hirashima N, Juichi M, Komine D, Kakizaki M, Ikkyu A, Mizuno S, Takahashi S, Miyoshi C, Funato H, Yanagisawa M. Partial activation of SIK3 delays the onset of wakefulness and alleviates hypersomnia due to the lack of protein kinase A-phosphorylation site. Sleep. 2024 Dec 4:zsae279. doi: 10.1093/sleep/zsae279.

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